Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs6586013 | chr10:88215454 | G/A | 9.21E-15 | 297 | 3.33 | 24.6 | 21.2 | KM Plot |
| CESC | rs6586014 | chr10:88224500 | T/C | 1.6E-14 | 297 | 3.33 | 24.6 | 21.17 | KM Plot |
| CESC | rs6586015 | chr10:88228487 | A/G | 1.6E-14 | 297 | 3.33 | 24.6 | 21.17 | KM Plot |
| CESC | rs66505225 | chr3:129241528 | C/T | 4.47E-5 | 293 | 22.4 | 20.63 | 14.73 | KM Plot |
| CESC | rs66517733 | chr3:100363100 | G/A | 1.15E-5 | 297 | 22.4 | 19.3 | 12.05 | KM Plot |
| CESC | rs66556397 | chr3:129214511 | G/A | 4.92E-5 | 294 | 21.73 | 20.63 | 14.73 | KM Plot |
| CESC | rs66586915 | chr3:129179377 | A/G | 5.09E-5 | 293 | 21.2 | 20.63 | 14.73 | KM Plot |
| CESC | rs6661394 | chr1:59089145 | C/T | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |
| CESC | rs6661513 | chr1:59089287 | C/G | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |
| CESC | rs6661551 | chr1:59089114 | G/T | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |
| CESC | rs6661592 | chr1:59089300 | C/T | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |
| CESC | rs6661808 | chr1:59089534 | C/G | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |
| CESC | rs6661896 | chr1:59089590 | C/A | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |
| CESC | rs6661969 | chr1:59089494 | G/C | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |
| CESC | rs6674319 | chr1:59089209 | T/C | 3.59E-5 | 295 | 21.23 | 24.6 | 13.8 | KM Plot |